NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208224_1001276

Scaffold Ga0208224_1001276


Overview

Basic Information
Taxon OID3300020528 Open in IMG/M
Scaffold IDGa0208224_1001276 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4576
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F033349Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0208224_10012761F002909N/APDALDTYLGDASEGSLLQQIIIDWWNKKVIPPIWANLDSKKINASSSLRQSFVPGQITKSPTSINTILLAEDYWEFVEYGRKPTRNGHIEGTPYLWQSIKEWMAFKAVKPPEDFTYDSYAKAIARKIHRVGTKPKPFLESAFTESIQMELVNELNARFGDLIFSEDIKL
Ga0208224_10012763F033349GGAGGMIEATINGWILTLGKDDKYVYIDKQVDDYLLEHHFDELEPYLIKRDVYFGGCVETNLVGIETERFFYLEPDKFTIIFMLGHKTNFL
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