NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208233_1000046

Scaffold Ga0208233_1000046


Overview

Basic Information
Taxon OID3300020529 Open in IMG/M
Scaffold IDGa0208233_1000046 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21361
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (60.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F008814Metagenome / Metatranscriptome327Y
F038246Metagenome166Y
F040629Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0208233_100004610F000473GAGGMVSNVYDDKHFKYGMNQWTGEPNKPVFYTEEMKRKVWEIRKPLFLLMDIVKYPDFLALRLYEDNFIQFDGEEKEKVIDYVTKVKKLLESYGVRVELEGKPTN
Ga0208233_100004616F008814AGGMDKKLTVLEEIIKDIGEELYQKWYNALAIEDRTEEASKAMAANAGETAIWVIQTFMNKFNDAADELKGD
Ga0208233_100004648F038246AGGAMGILDNLEAALERAEQADKCYYCSNLAKYTDVAHKDHNNYVVVGVCECHAFKGLSS
Ga0208233_10000466F040629N/AMNKYSIKIEITAVIEAFNEDDARDYVNEIFGTDEEVQSVKIVSVKEKR
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