NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208233_1000738

Scaffold Ga0208233_1000738


Overview

Basic Information
Taxon OID3300020529 Open in IMG/M
Scaffold IDGa0208233_1000738 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6035
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F022813Metagenome212N

Sequences

Protein IDFamilyRBSSequence
Ga0208233_10007383F022813N/AMAILTDTGFPPTFLNRYILSELEHYELIAESEQLSPMVPAQFPTNIEDLYNDSIQIRQTESPILIVYDRLMRFRPTPFYLQKREQLIYFIYSTDVGKLIDTVRVISNALDREDSSAEDVNRYNINNPILNANADISTPFNIMFHSTRVYQADESRDVAELASARTLFVNKLIVEYDYHVAVDSDSRYT
Ga0208233_10007385F004405GGAGMDACEVTDFMFPMKADIYFPILAQGEYGQPTKNWVYDRTITCNATSVGGLGSEDVKPDNFLKYENKLISRTKEDPRLSSNNANNATTNILIANIRDASDNIIYKETAGVRSGRGTIYEVATVEPFAGPFGYTEYYKMLWRRAENQTVGD
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