NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208487_1000213

Scaffold Ga0208487_1000213


Overview

Basic Information
Taxon OID3300020531 Open in IMG/M
Scaffold IDGa0208487_1000213 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14830
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F008943Metagenome / Metatranscriptome325Y
F014121Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0208487_100021319F001881AGGAGGVTDRAKEFMNAVWECRNNGADTEEKLVSAVLLTASNFVKTYNAQNDLIVLDKDDLLKIAEELYELD
Ga0208487_10002135F008943AGGAGMKNFNEIDWAVLSVFFIVIVAGAIITYSEQQQRTLFQQTYNKNLECRQTLKNNTKSFVNEICGPIPVVGDFVK
Ga0208487_10002138F014121GAGGMTNQAYQIWETFKANLKDEPTEDMKKALGNAIRVISSNIHRSGILEDEPWLTHIADELNCISYDVEAL
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