Scaffold Ga0208364

Basic Information
Taxon OID	3300020533 Open in IMG/M
Scaffold ID	Ga0208364_1000456 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020533 Open in IMG/M

Scaffold ID

Ga0208364_1000456 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9496
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (18.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9496

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (18.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021090	Metagenome	220	Y
F025278	Metagenome / Metatranscriptome	202	N
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F051915	Metagenome / Metatranscriptome	143	Y
F054853	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100045612	F054853	N/A	MSEEKQTEISEEIEWEDAETTTRSDLISCAYYAISAVEDIDLTLVSKMEANRIKTIRRQSLDIIANVIGEMHAEIFDIEEDI
Ga0208364_100045616	F032560	N/A	MQETYQDLEIGMQNLLPMERQMLLAKIYHYAWYNKEAYDQLITFVKHWEKHSEFKAVFFKQDSEESINQI
Ga0208364_10004562	F025278	N/A	MTIFLTIVFLIHLISWVLYQNHQFLERDLYATDSYNAYKHNKKWHIWKGVNHLSVYVLVWSLYGFFSMVFFATLFWFGFDILCNIIVLKRPAFYVGKTADTDRFIRKVAEFIKIKPEYTSVLIKVLILLILLILK
Ga0208364_100045620	F025648	GGA	LQSGLIDKEDLTIIEAFKGDKLNLISPVTLRENLAYIFTLIGLTRLPDKIELEVIEDYIRSTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEQPVKQLTEQEIVDFTKEDWLNGKRQDFNRVFNADKVFKILLKQGKLTFTQDQILETIRVVREDNLYRLNKMHPLDAKKFSQEIKKEDFIELQCKKLALVKYFESFSG
Ga0208364_10004563	F021090	N/A	MITLNEQQVKELEQFINTIPTAYGLPLLQFLGKLNAEQNPQTELTED
Ga0208364_10004565	F051915	GAG	MMKFLNTIYGSWVKVFVSAVLTMIIAKGNIYLITLEECISAGVISILPIIINYLNPNDKRYGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208364_1000456

Overview

Ecosystem & Geography

Associated Families

Sequences