NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208596_1000814

Scaffold Ga0208596_1000814


Overview

Basic Information
Taxon OID3300020534 Open in IMG/M
Scaffold IDGa0208596_1000814 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9077
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003904Metagenome / Metatranscriptome462Y
F014128Metagenome / Metatranscriptome265Y
F035278Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0208596_100081411F035278GGTGGMDWRMNDKHIKKIIDKQFKIANLDIKYEDICNNQVPNWYHKYTYSPEENEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLKTSTRSIKNNKKK
Ga0208596_10008142F014128N/AMEYLQKMGIQIGFLISGLFGAILMATKNEKTDVKSVVLSLIGGMCAANFLTPVLGDMLNITNVKHQNGIAFIAGFIGLKLVEIVSENLLQKLGHKSKSKKTTKRKRT
Ga0208596_10008143F003904AGCAGMNNIILNIKKYLFFALLPTVILVILSISSLKDIEQGYARFRLGRDITLYLRKSTDLLTYLGVAYTTTSDKKFLDQFNNHLKEREKYFNEEIFISKILTQEELKEFRKGLGISSDLAKDVENPAFEKMDNKTFFSDKYLDYKRRIIENNQNFRTLINDSSEKIIKDEIVKLNIYLYILCLIIILLVYLIKCDNQPIKKKTIKKKKK
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