NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208596_1001921

Scaffold Ga0208596_1001921


Overview

Basic Information
Taxon OID3300020534 Open in IMG/M
Scaffold IDGa0208596_1001921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5172
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023351Metagenome / Metatranscriptome210Y
F059006Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0208596_100192110F023351AGGAMVKEAKGGTFAPTDYPVIKRALHSYLIECMRTEGVSERDPHPDVAIISNLIHRLGRIDG
Ga0208596_10019213F059006N/AMKEIILIATFSDAERKEIESVKDIAQKKLRELLSDLPTDTYPYFKESILTGGCFASLFLYEEVHDWDVYLKDFVTAQAAERFVMSDTPTLNEVAGVTPGYIAEIKVKGKLVTPNAITFKNGLQVITMTGKEQRETFDFVHCMPYFDMVTQQLFISRQQYDAIKSKTLIKNPKHANHLSTKRIEKFTDRGWSFQ
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