NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208596_1003758

Scaffold Ga0208596_1003758


Overview

Basic Information
Taxon OID3300020534 Open in IMG/M
Scaffold IDGa0208596_1003758 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3329
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054817Metagenome / Metatranscriptome139Y
F060618Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208596_10037581F054817GGAVVIDTNKYDNMVSAIAYEFSRKFHMCDADDIRQELWVWFLEHPNKITVWEELDIKQSTKLVARSLRNAAKDYCQREKARSAGYKVDDNYYYDREVVEILLPAVLRKDLNA
Ga0208596_10037585F060618GAGMLIPVDGHFECSEPKCDFVTCDLFEFMEHCGVEYEWGVRLNKRYTFDLFQFLEILNDLTNIGDLDAMYDHVQSATLLLINASGDELEDFIQESVVQSEMSEVMDGIERLLKENG
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