NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208722_1007451

Scaffold Ga0208722_1007451


Overview

Basic Information
Taxon OID3300020537 Open in IMG/M
Scaffold IDGa0208722_1007451 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2111
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048095Metagenome / Metatranscriptome148N
F091311Metagenome / Metatranscriptome107N
F091313Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208722_10074511F091313GAGMATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFAHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYN
Ga0208722_10074514F048095N/AMSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNICRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFELKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE
Ga0208722_10074515F091311N/AMVNNKTTIKGNREIAEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILGLFYRISIALEIKSRVKLMKTLKRLAREVFILSLRSRKSWKKKLPRFLIANKHVPI
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