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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020538 Open in IMG/M |
| Scaffold ID | Ga0208595_1001451 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7410 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053787 | Metagenome / Metatranscriptome | 140 | N |
| F067402 | Metagenome / Metatranscriptome | 125 | N |
| F075719 | Metagenome / Metatranscriptome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208595_10014512 | F067402 | GGA | MDTSFVANVHEVVFATFLATYCSPALNLLISKFFKAHMAIYREGNVSYNTVMIVNTILMDFFVKYQRMFSRNIGMEFVEHVLSRLIGYEGFWQLINHLNIHIFYLTYRPQILVILSDALLGTYGSRNFNRISNKIPPYCIGEVECEEFRTNRSKFIFFDTF |
| Ga0208595_10014513 | F075719 | AGG | MTLKDLVVEPRGGTSVVLDMTIKDLVKESKSDTLNVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELIHSREVSDQIMKSKHFKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVVQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV |
| Ga0208595_10014516 | F053787 | N/A | MSEQDEIEVEVVEEQSSQSDRVKLEKSIRKDIFLAAKMAHHIMKNVEYLNKQGHNSASECANQTYLKVMDMATQVESYFSDKRKAKVVTSNQDASEVNKVDKQALEKRIKENMKESLRLLNALLLALKTNKEKVCAYGDPDPSFGLINETLMATVRLSTNLYEAFQLEEVREKDLSLSEIQQINSIPIEDSTGELTSDSINQQSQQH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |