NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208595_1001451

Scaffold Ga0208595_1001451


Overview

Basic Information
Taxon OID3300020538 Open in IMG/M
Scaffold IDGa0208595_1001451 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7410
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053787Metagenome / Metatranscriptome140N
F067402Metagenome / Metatranscriptome125N
F075719Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208595_10014512F067402GGAMDTSFVANVHEVVFATFLATYCSPALNLLISKFFKAHMAIYREGNVSYNTVMIVNTILMDFFVKYQRMFSRNIGMEFVEHVLSRLIGYEGFWQLINHLNIHIFYLTYRPQILVILSDALLGTYGSRNFNRISNKIPPYCIGEVECEEFRTNRSKFIFFDTF
Ga0208595_10014513F075719AGGMTLKDLVVEPRGGTSVVLDMTIKDLVKESKSDTLNVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELIHSREVSDQIMKSKHFKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVVQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV
Ga0208595_10014516F053787N/AMSEQDEIEVEVVEEQSSQSDRVKLEKSIRKDIFLAAKMAHHIMKNVEYLNKQGHNSASECANQTYLKVMDMATQVESYFSDKRKAKVVTSNQDASEVNKVDKQALEKRIKENMKESLRLLNALLLALKTNKEKVCAYGDPDPSFGLINETLMATVRLSTNLYEAFQLEEVREKDLSLSEIQQINSIPIEDSTGELTSDSINQQSQQH

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