NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208595_1007908

Scaffold Ga0208595_1007908


Overview

Basic Information
Taxon OID3300020538 Open in IMG/M
Scaffold IDGa0208595_1007908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2093
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015440Metagenome / Metatranscriptome254N
F017436Metagenome / Metatranscriptome240N
F017786Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0208595_10079081F017436N/AVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIAVLSRNSDRYRFKRIQLALYILLSEALSIEGSNERYKELKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNRF
Ga0208595_10079082F015440N/AMEGIRESERNFQLFKAGLSMVSCLTGEAIRVLESNLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKERICEKEAKIAEALTLPLIRNLRQLRDLCNKGKSEQTLLELNTFKFHIDYLSNMRHEQWTQDMLKTHIFIVIQQEMDNILNVLNPKITEPLDKNQESTIRQEWTKVLSS
Ga0208595_10079083F017786N/AMDKGIKFVMNREEMKSLSAKQILIAKEKLEHGEYVLLVNEFWIPPINLQRALEIVRNMREKLKLRELELETPRI
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