NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207941_1005551

Scaffold Ga0207941_1005551


Overview

Basic Information
Taxon OID3300020539 Open in IMG/M
Scaffold IDGa0207941_1005551 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2329
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011844Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0207941_10055514F011844N/AMGQILGSLQNIEIDVAGGSSYKNLVCLRTASVNTTVDSTTEQTNCGPLTSVADATMGLDFDAICEVSPTVAQVSYEDLLAAMAAKTLVAVRVQNPVVSGASVGAAYYHQFLGYITSLTLNQSTTEFINFSGTVTSTGIVDVTP
Ga0207941_10055516F004112N/AMSPRHFSLMMKGHEIKRIDVYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEESGNVMNDDEMREIFKRLGK
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