NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208359_1000014

Scaffold Ga0208359_1000014


Overview

Basic Information
Taxon OID3300020541 Open in IMG/M
Scaffold IDGa0208359_1000014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41017
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (6.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017300Metagenome / Metatranscriptome241Y
F030766Metagenome / Metatranscriptome184Y
F031491Metagenome / Metatranscriptome182Y
F041189Metagenome / Metatranscriptome160Y
F066792Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0208359_100001423F041189N/AMFSTKGQEVKQGGGTAKSLQAGVVYAHIYSGQVRTSNRGDKKTLELILEGPASEGFEGWPIDKDNPEGLKFTGQSSRVSATIWTDQFNDSNVSKNEIMYKIAIIASELGMRDQIDNIQASSLEEWVEKAISMLKYNNLYWFLKGTEEEYNGKTIIKLSLPKYKFVSADESKLDAFDKNNQYHYKALQNKPVSSFEPVNSDFDM
Ga0208359_100001425F031491N/AMTNYTSQTTDPKELKKLKLESVRDFHQDLIDDLDIPRTDFNMKMPFYDKHGRMVVGIFSSEFKKEKGFFFELVTRDLTPADAERKVYRVPFNSSFEDEYELNEKGSYLVPLEELRVVNPTSVAIKKTAKFGLEEERHSVNGFSLSKAPMQAYKAPAAMEDAPYSEMTIRDYYAIQSGKPISSKTWLNELIKSTK
Ga0208359_100001430F030766N/AMAKKFYAQKDALGFPIPGTMMSVTAPANIPASSILIPAENVSPGVGQTVVAQPSGLRYFVRKDSKGAIIPNSLIISLKKPAGSVYEFKLLK
Ga0208359_100001431F066792N/AMPTENASITAFKVWIFPSLVSLVSLLIWNDVNEIKADVKLLMAQSNIDKTRIDNIERQLFKGTSVPFTPVNAFPERQQILALLPENKIKLVKYEF
Ga0208359_100001456F017300N/AMKQSKVRVTADVNGNVIGVSLNNPEYGYVRVEQSVTQISEAGWLKPVKRSALIKGKVEDLAQAGFVEGHELSGKIIVKESLIPFNTENPDRDLKIAGQTGVVCTIDDQPIYRQTFFTSNQEAYDELITHDNTNEIREVQRAQKEITSLKSNSLRDLGRRVLIEETELG
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