NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208359_1003907

Scaffold Ga0208359_1003907


Overview

Basic Information
Taxon OID3300020541 Open in IMG/M
Scaffold IDGa0208359_1003907 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2729
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026559Metagenome / Metatranscriptome197N
F027823Metagenome / Metatranscriptome193Y
F038204Metagenome / Metatranscriptome166N
F041755Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0208359_10039071F026559N/AMKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDNCQ
Ga0208359_10039072F038204N/AMNKDIEFNGDDLVKSVESFASTLPTKIEYFEVGNCGWGIILRREIDTNGKNYISHTDDSVTFTDSFTDIYYETQYDDLTHTRKFNVIRDELIASHKKKIEELQKEVDILEASDTIDKYNSIVYKK
Ga0208359_10039076F041755N/AMNITAAKMSGKEIDAKYPILNTKWKYSHYKGDWNGYNGYYYSNYKDWSTEVVTDPWFRELKSNDPIKTTELQTIFSTTVEGNKVILVIYLKTYV
Ga0208359_10039077F027823N/AMNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRGVYDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMPISDDVYKTKMYHTTVESNPILLVLYKKKD
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