NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208857_1000773

Scaffold Ga0208857_1000773


Overview

Basic Information
Taxon OID3300020542 Open in IMG/M
Scaffold IDGa0208857_1000773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5400
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F053068Metagenome141Y
F062477Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0208857_100077312F062477N/AMKFTAMKLTTFFLLLLLMPLLSFAQRSKSRIAYSKQDFTPELTTYDLQLFNLNYNSMMYWYGTAMEIDSLYQLERLKTTYYAKITGIQAQSYETLAEIYANKQAIEKAIATEKDNEIKDLKKKNRRLIITNTALTLGITAVAVSTIYFAIL
Ga0208857_10007735F009003N/AMKAKEKAWQLYSNYFDIVEGGEQLGELAVVHLKAVNAALYCVDEAITNAPDEIMQDFEGTGEYYSVKAYYMHVKNELLKLTKYEAKRNDVPNQ
Ga0208857_10007737F053068N/AMTQEKKETAIRRLHLTLKRRFKGQAIKMTWAEMEGLLNAVQTIEMNHIHNSYNDGYRDGETGQPNKTQVI
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