NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208089_1000361

Scaffold Ga0208089_1000361


Overview

Basic Information
Taxon OID3300020543 Open in IMG/M
Scaffold IDGa0208089_1000361 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11949
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F009600Metagenome315Y
F025437Metagenome201N
F082108Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208089_100036117F025437GAGMLMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMATIDKPDFQALEQELNKLNEVVAELSKYKELYLTLKRTFNEF
Ga0208089_100036119F009202N/AMYPSDDSHDLYIREKQLMLAGTAMWLAQQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRVDSEQMIYEIQRLQGIIEDSL
Ga0208089_100036123F009600N/AVGKVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVKSLKLVHDTTIPKDTAEITFTGLLVSE
Ga0208089_10003617F082108N/AMLYIVTPCSRPHNLVRLKQHIPAYATWVVMMDASTNYKGATSASVTHYSTRTGDMGNPLRNEFLELYADSFTKEDWVYYLDDDNILHPKFLEEWNNLNGLDCSIVTWGQIGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMTYEADGIFASEAARLGTLICVEQYLCYYNALK
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