NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208089_1004367

Scaffold Ga0208089_1004367


Overview

Basic Information
Taxon OID3300020543 Open in IMG/M
Scaffold IDGa0208089_1004367 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028720Metagenome / Metatranscriptome190N
F030673Metagenome / Metatranscriptome184N
F065451Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208089_10043671F065451N/AFLLSELSHAVLATLNPTPYDKDEVIENLLAGIVLVAYQKRGDFVLKLEFDRFEPRNELQRFWAPYINSEDPPRPAVQITQELLWLQARHVKNTEEFGTPYVCDHGYDKILHRVLKDCLKLLSSLTDLSIRTIAFRQMEKDV
Ga0208089_10043672F028720N/AMATKRKGFWKDYSKQVVKMTSEKNKKDPMDAFWCLNKALLDLYKVMDNRGGPKEVNRYSGYCLHFVVLLDTIVLNYGDLSYAMDDPDTFDPLCKSTLLSVASSLSGIARTLWVEKRIHNRGDPVRDEWESLEYNFSGETCHMLKLALTRVLRYIKSNTDLSLCEMAEQHVEIFYGREPTPARAYDLC
Ga0208089_10043674F030673N/AMLVASVTFDLTHIFTLVFTSLLYQKAGIEKTIVSTVYNGDKIQSGDNYILPGLAEITWRQAENSCFNKKAKILVVEKDMDMKKIMTDLEVNSIWVGVYKSLTMDVFVDDQERSVITSTDNDTIDHSGLDAFAFTETQAVILKKVNGDLKYETVLKTANHRCICVQKIPFPRRKADILGLKTLQSNLAQEISLLTDTVKISFSKIERSLLTLPKLNE
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