NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208089_1005796

Scaffold Ga0208089_1005796


Overview

Basic Information
Taxon OID3300020543 Open in IMG/M
Scaffold IDGa0208089_1005796 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F005585Metagenome / Metatranscriptome395Y
F013317Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0208089_10057963F013317N/ALIEKKKWDYLADIRARTGAKTLYINATPQGIYQFDLGALIEPEWVLKSLPITTDFSNKAHSERLCGFFDIRLAELLLV
Ga0208089_10057965F005585GGAMLVTPCSTGGLNMATRGTIFYAFSKSVRHSVFSSETHLTWRLLLSRPNSQECWKVQSAKIRISISLDMPLSWVDADFLHQKIGTTLSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQACADDSQNWPDGTFYSLKEQLEDAINQFAGREKLDVELPR
Ga0208089_10057966F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNTCDVYIIKTELYRTEADANPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKVNQGPKKPIETTKPALAEFIKEQRPNDPEPIVWDVTAVADALGAEIIDELPLCSNGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMRIGSDGHWVF
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