NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208089_1007545

Scaffold Ga0208089_1007545


Overview

Basic Information
Taxon OID3300020543 Open in IMG/M
Scaffold IDGa0208089_1007545 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F008359Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0208089_10075452F005299N/AMINDTPQDIWESKVGYDSINKRMIAKVYKHLYNAMELMSKPAWTTIIALMLKEDGRLNQVKVNGYYSTIRKNLKDIKVIKYNGRKGLEKGDNWNRFFGDEDWSWFITNTNSGGYGIIVK
Ga0208089_10075454F008359N/AMKSKLNQKSLYEIKKVKRVMRMKSEGFEPTSFEVFKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKLK
Ga0208089_10075455F003691N/ALASIKYCRIFMYWVERMTPHIVKKYNMNSRMTNEFTETAFNTSRNERPIYRNFAKSKLSDCVKPQSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESSTIKQIISSYPIKLGKVEKRFIAECKRELKSVLKLNNKQLEIVLG
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