Scaffold Ga0208089_1016514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208089_1016514

Scaffold Ga0208089_1016514

Overview

Basic Information
Taxon OID	3300020543 Open in IMG/M
Scaffold ID	Ga0208089_1016514 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1103
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002085	Metagenome / Metatranscriptome	595	Y
F045054	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208089_10165142	F002085	AGCAGG	VNVITPVEGTSNIRVADFLRITTTSGTYLMTTAPSNMTIAAVDASPFQSVGTLLAVGQVQRDIKSTANDTTVSLSGIDTSMLGFVLGQNVKGSPIQLWHGFFDTNGALITTGGTGGLYQYFNGIITSFSIGEQWMDEARMYVGTISVSASSIQLILQNRIAGRYTNNSSWQFYNSGDTSMIRVPFIETINYQFGKDAAPNS
Ga0208089_10165143	F045054	N/A	NKVLVLGSLPALASTDYLFRIGDFVQVGLYSYIVTADVQRGSGSTVNVPVHRNLLVTLASTVSCVAGEFGTTVAMGGTTYTGVTFPVVLREYPTYSLVPTANDSFINWSGPFVAMEQVL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.