NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207937_1007824

Scaffold Ga0207937_1007824


Overview

Basic Information
Taxon OID3300020544 Open in IMG/M
Scaffold IDGa0207937_1007824 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2306
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F021930Metagenome / Metatranscriptome216N
F022867Metagenome / Metatranscriptome212N

Sequences

Protein IDFamilyRBSSequence
Ga0207937_10078241F007918N/AMCDTTLEESDPFLNLELDIEAGINQELSSIKQELLSILTNVETVTEAMNRAILKEEDRREQFRTLCSLIDHLFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKTEMEKVLSQQRIEKFQTNPQQEERRPQKG
Ga0207937_10078243F021930N/AMSDQDLRRVTDLLKEVEFEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVTKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLTIAEKLVVQLSVIEHIISCQSLEQMGELMKIVTSEDYEEAREKIDLRLTK
Ga0207937_10078245F022867N/AMELDLQIREQLTSLASNYYNRFWMKSYILSCMVIENAAQNIQLGIIGGKGVTTILGYNIEISRQIDGLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLPH
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