NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207942_1002225

Scaffold Ga0207942_1002225


Overview

Basic Information
Taxon OID3300020549 Open in IMG/M
Scaffold IDGa0207942_1002225 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3344
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011742Metagenome287N
F012211Metagenome / Metatranscriptome282N
F020138Metagenome225Y
F044970Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0207942_100222510F011742AGGAGMQTIEFVPFDWVDDDFNPDIDRIEVDYQWHEADDSVGLLSYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQ
Ga0207942_10022252F012211AGGAGMPTDEEQFKYECWAIVQELDPDDIADAIADSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKITAAKMDGPFQQMFDE
Ga0207942_10022254F044970AGGMSDFNDYSTMLMAIENKTRELSHKCLNKNYAGFTGDITSIQHELTMLTMWITQAQGEQIRENTYRILNKV
Ga0207942_10022259F020138AGGMNQQQTNRLNAFWQDVEAHKALNPSSPETALVILKSVALDALLAAQDIEQIGVNDANN
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