NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207942_1002434

Scaffold Ga0207942_1002434


Overview

Basic Information
Taxon OID3300020549 Open in IMG/M
Scaffold IDGa0207942_1002434 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3130
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004696Metagenome427Y
F008491Metagenome / Metatranscriptome332Y
F011762Metagenome / Metatranscriptome287N
F017128Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0207942_10024342F017128N/AMDSITHIDIEKYNSIEEQRHKTMGDNEFIQWCKQYNIGSRVEVVSEQRLKANELMSQYTKYTNYISKRN
Ga0207942_10024343F004696N/AMDYAIMKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNNITEQDIQDEDNYLKQVFASHPPKAKA
Ga0207942_10024345F008491N/AMAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTRALYNAKRLSTILSSAKVGAMALVLTIGMVACGAPASSEVKTDSTATDSTKVDTAVVAPVADTTSVVK
Ga0207942_10024346F011762N/AMSKSKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDETSVRKYIGELEVETKMDKLETSLIKNVLSKKDKKEVLASKELSDMIPALEVLVDANFRDMNAKRPEDTDK
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