Scaffold Ga0207942_1009659

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207942_1009659

Scaffold Ga0207942_1009659

Overview

Basic Information
Taxon OID	3300020549 Open in IMG/M
Scaffold ID	Ga0207942_1009659 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1299
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_10096592	F024504	AGGAG	VNRKPIGVETPYRKSDYTYQNMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0207942_10096593	F015570	AGG	MNDKLDQAFDELEFDVNVTEEMRIAKYLAEQKEISCGVTDGSIQRALVRDLTENLRTLPNNIDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0207942_10096595	F004231	AGGAG	MSVKPKDFQHEICVYLEGIGECLVCFDILSPQDELDPDHSDSYEIDFSVFDEDDKHITYDITKKQYNHCENKAMDEMRDITTNWHKEWEQCFD

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