Scaffold Ga0207942_1022985

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207942_1022985

Scaffold Ga0207942_1022985

Overview

Basic Information
Taxon OID	3300020549 Open in IMG/M
Scaffold ID	Ga0207942_1022985 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	793
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_10229851	F014489	AGGAG	MEMKQQHYAILKRLQHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKQSGIREGAFDFLKYPSKFGDNLVYPKTYV
Ga0207942_10229852	F004231	AGGAG	MSVKPKDFKHHTYVFLEGIGECLVCFDILTPEDELDADHSDDYEIDFSVFDEQDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD

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