Scaffold Ga0207940

Basic Information
Taxon OID	3300020552 Open in IMG/M
Scaffold ID	Ga0207940_1003450 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020552 Open in IMG/M

Scaffold ID

Ga0207940_1003450 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3703
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3703

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010668	Metagenome / Metatranscriptome	300	N
F067403	Metagenome / Metatranscriptome	125	N
F073125	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207940_10034502	F010668	N/A	MDVGAEHIRETRAKILAAKKEIREYLRLPEDARGLLILTHGKGNVIFLNQENLPTGAERKYTWEEHSGQYTTQLITVYDYESMYMTAVDVDGDESATFVCLCLAQESGVRFTLERNKRHDYTIISNHGGICIVEQTKENDIWLQLQEPDRNLIVRNEKIDMDFGEDLEGRTRMRMCYTCKHPDIHQWPYQNLSKWETVEWNEKPKDESTTSTVDNLSTEEPISK
Ga0207940_10034503	F073125	N/A	MPDIEMNPLLFKAFSPPTTSHEETSFQRIQPYASLRKAKPPVPPRLGTDPLKRRFGENGSLKDDTEPVYQVSVAYDASTQRAKIQTS
Ga0207940_10034504	F067403	N/A	GNFHANSFRKLCVNEYTTPFRVTKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDAARVHTPVTGSIPNNVLETHYVLGSTRATVVPSNGKMSFFYKPVYNTSIDTIADGLASIIPHMSSVLCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLYKALITEWRFKENAIPIAVPNNYTVNMSLDVDDVVKENLINCNRQKNNLKEGFRFITNPIDLALLMFEHELLLAEIKSIRQEILTPLTNPLSLIDLNNLDEQSGSNPTILKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISVFLALGFFVQCSMVTANTIKRWRTERDERIREQERTRFRVNRIERSHPPIRETVLPTCENCSEKREMYRTRPPSKVIKRSHRNKGNIPSHLRGSKLDMNQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207940_1003450

Overview

Ecosystem & Geography

Associated Families

Sequences