NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207940_1003450

Scaffold Ga0207940_1003450


Overview

Basic Information
Taxon OID3300020552 Open in IMG/M
Scaffold IDGa0207940_1003450 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010668Metagenome / Metatranscriptome300N
F067403Metagenome / Metatranscriptome125N
F073125Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0207940_10034502F010668N/AMDVGAEHIRETRAKILAAKKEIREYLRLPEDARGLLILTHGKGNVIFLNQENLPTGAERKYTWEEHSGQYTTQLITVYDYESMYMTAVDVDGDESATFVCLCLAQESGVRFTLERNKRHDYTIISNHGGICIVEQTKENDIWLQLQEPDRNLIVRNEKIDMDFGEDLEGRTRMRMCYTCKHPDIHQWPYQNLSKWETVEWNEKPKDESTTSTVDNLSTEEPISK
Ga0207940_10034503F073125N/AMPDIEMNPLLFKAFSPPTTSHEETSFQRIQPYASLRKAKPPVPPRLGTDPLKRRFGENGSLKDDTEPVYQVSVAYDASTQRAKIQTS
Ga0207940_10034504F067403N/AGNFHANSFRKLCVNEYTTPFRVTKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDAARVHTPVTGSIPNNVLETHYVLGSTRATVVPSNGKMSFFYKPVYNTSIDTIADGLASIIPHMSSVLCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLYKALITEWRFKENAIPIAVPNNYTVNMSLDVDDVVKENLINCNRQKNNLKEGFRFITNPIDLALLMFEHELLLAEIKSIRQEILTPLTNPLSLIDLNNLDEQSGSNPTILKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISVFLALGFFVQCSMVTANTIKRWRTERDERIREQERTRFRVNRIERSHPPIRETVLPTCENCSEKREMYRTRPPSKVIKRSHRNKGNIPSHLRGSKLDMNQ

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