Scaffold Ga0208852

Basic Information
Taxon OID	3300020560 Open in IMG/M
Scaffold ID	Ga0208852_1002325 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020560 Open in IMG/M

Scaffold ID

Ga0208852_1002325 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4727
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4727

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (41.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018323	Metagenome / Metatranscriptome	235	N
F023520	Metagenome / Metatranscriptome	209	N
F024962	Metagenome / Metatranscriptome	203	N
F028416	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N
F055419	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_100232510	F023520	N/A	MTTTKEGKYVKCCDTKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLVSKILENVDNIDTSKEWNHQDNKSKFVEIKQVMTKLRLCYPLWKLNKYDIEKYSTCLCPNCDSIDVAGGRTLKKLGELTLEL
Ga0208852_100232511	F024962	AGAAG	MKILKSTIKEQFENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSAENITGLDHLLSSKIIDTLEIYLEALEETNINERQRRLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWLAEMPKDN
Ga0208852_100232512	F031075	N/A	MSQEKSTIVSEAINRRKNSEDCGHEVNACTCPPSKEYEKYTKIRALTHLIGMINFMPPFDAPISYGPLERIWNFKRQIREIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLYQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK
Ga0208852_10023253	F018323	GAG	MGNTKNNDEIVELIKSLEENSVDLTSAMDTVRVLDELKLPLFEHILNNQICKDLNTISTEINHDREDERVFRKIFHKVRVLKLKDSEWKFKQRAKKSTYSRNRMIEEKRLTLSQEETRELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRNWLSFYRFPDLRKITIYNEKNFLCKIEGIRRKYSRLKWSIVL
Ga0208852_10023254	F055419	GAG	MTETLAPHERLALYNLTDEEIERIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNGQH
Ga0208852_10023259	F028416	GAG	MERQPVNGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIFDKVRQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208852_1002325

Overview

Ecosystem & Geography

Associated Families

Sequences