NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1006523

Scaffold Ga0208852_1006523


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1006523 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2582
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012769Metagenome / Metatranscriptome277N
F014232Metagenome / Metatranscriptome264N
F028152Metagenome / Metatranscriptome192N
F054590Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10065233F054590N/AMVENIAELRKNVGFTKLHRLANYKQRRQIADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWMI
Ga0208852_10065234F028152N/AMDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRAVLVLQPSPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERTNFEITEVRKTSPYEYKDPWEVNFKIPKVKNETKIVTRVRNPTYLDFLYRPPIN
Ga0208852_10065235F014232N/AMSQEKSEINNKVITKEDTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPSWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLSCSEVKRHYQEMLDATSSEESNSE
Ga0208852_10065236F012769N/AMQFQYPKFKVGELVKDKFDPILKEEYQEGTAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEAVIKEVTAQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQISRKFASPERK

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