Basic Information | |
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Taxon OID | 3300020560 Open in IMG/M |
Scaffold ID | Ga0208852_1006523 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2582 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012769 | Metagenome / Metatranscriptome | 277 | N |
F014232 | Metagenome / Metatranscriptome | 264 | N |
F028152 | Metagenome / Metatranscriptome | 192 | N |
F054590 | Metagenome / Metatranscriptome | 139 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208852_10065233 | F054590 | N/A | MVENIAELRKNVGFTKLHRLANYKQRRQIADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWMI |
Ga0208852_10065234 | F028152 | N/A | MDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRAVLVLQPSPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERTNFEITEVRKTSPYEYKDPWEVNFKIPKVKNETKIVTRVRNPTYLDFLYRPPIN |
Ga0208852_10065235 | F014232 | N/A | MSQEKSEINNKVITKEDTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPSWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLSCSEVKRHYQEMLDATSSEESNSE |
Ga0208852_10065236 | F012769 | N/A | MQFQYPKFKVGELVKDKFDPILKEEYQEGTAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEAVIKEVTAQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQISRKFASPERK |
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