Scaffold Ga0208852

Basic Information
Taxon OID	3300020560 Open in IMG/M
Scaffold ID	Ga0208852_1006523 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020560 Open in IMG/M

Scaffold ID

Ga0208852_1006523 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2582
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2582

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012769	Metagenome / Metatranscriptome	277	N
F014232	Metagenome / Metatranscriptome	264	N
F028152	Metagenome / Metatranscriptome	192	N
F054590	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10065233	F054590	N/A	MVENIAELRKNVGFTKLHRLANYKQRRQIADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWMI
Ga0208852_10065234	F028152	N/A	MDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRAVLVLQPSPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERTNFEITEVRKTSPYEYKDPWEVNFKIPKVKNETKIVTRVRNPTYLDFLYRPPIN
Ga0208852_10065235	F014232	N/A	MSQEKSEINNKVITKEDTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPSWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLSCSEVKRHYQEMLDATSSEESNSE
Ga0208852_10065236	F012769	N/A	MQFQYPKFKVGELVKDKFDPILKEEYQEGTAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEAVIKEVTAQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQISRKFASPERK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208852_1006523

Overview

Ecosystem & Geography

Associated Families

Sequences