NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208597_1004707

Scaffold Ga0208597_1004707


Overview

Basic Information
Taxon OID3300020562 Open in IMG/M
Scaffold IDGa0208597_1004707 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4225
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F019478Metagenome229Y
F036239Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0208597_10047073F036239N/AMKIKGWEKISGFTYKGYCIVNPIHDANEEGYFATVLNLNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKSHLTKTNIDTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQNAGTNFTYKSGSISITNNIQAAAIQALQTLQQQIDDYNKKL
Ga0208597_10047074F019478N/AMILKIYNTNRMVDTEFWNGRFRCLRVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFENWKNVTKTFGDALKKQF
Ga0208597_10047079F007690N/AMRNTTNETQNKTDKEAELSIKTKPKKILNSTRCGVDDIDELNYMLTIKNILKLQSQPIWDGWEVKLIYEGNHNDTYVFQLVKRKPLPMHNELCTIMLERIGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKEKL
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