NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208597_1012835

Scaffold Ga0208597_1012835


Overview

Basic Information
Taxon OID3300020562 Open in IMG/M
Scaffold IDGa0208597_1012835 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208597_10128352F038245AGGAMKIYFGNANDDMFGDGLFEVADNQFYYGVEHGTGPGGLDEVRIFDGCKRYLPIHLEAIPELIAALQEVQTIGKAIKEAERLTERAESDIEGYVNKAWHDDFEVDFDTE
Ga0208597_10128353F045760GGAGMASVSKSKQAYSALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHNNIRLAKLFKEFTGRASVDLFSSNPKVQAGALAYRRDWEKVKVIEGRVSFSLGARAHDSKGNLVWI
Ga0208597_10128354F078719AGGMDIIEIYLLFALTTGISSCVLFLAPAVALARETGVQNSFTENTWLSYAIYIIITTITSPFSALPIFIPHFAKRFKIGLERAVMESQT
Ga0208597_10128355F099303N/AMNFLEFTYTKADGTVSKRAAIPLFGPTKFVEAIDVTSLTESDFADFCREFSAMKNDHHNQVMEKLAQYDLRHNYRKFNPELMSDVTTDYA
Ga0208597_10128356F070116N/AMSQQIMPKFRTWDSQQLADAVKISLQIRAKIEEMCITHRISPNDLPNSLIPTDNLYSLVCAYEASYNALIENDLLKSGNLKTDKHIH
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