NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208718_1009065

Scaffold Ga0208718_1009065


Overview

Basic Information
Taxon OID3300020565 Open in IMG/M
Scaffold IDGa0208718_1009065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2048
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F010898Metagenome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0208718_10090651F010898N/AMDKINIYINSKNRSENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIEGFNNMFQIVMCNMNDEITSIFDYTLQDGNPNVNDVRTNLNGLLLNKVVVSYDRIRNKFLYKRTLPITTDNFKMYLRIINSEDFLGFYKSERDKLILLPYLNNIYSHSIVNISGDEAIIIKIAG
Ga0208718_10090652F004816N/AMKFIKYKQVARITLYGFDDLYRDNNSSVFTEPLNSEYFRNNLNAGVQVGNNAKRMRFQIKGLDNVKLSEHARFCIESLKVPFLYDANNDFKSIGQTIVRMSNLSSINCFDTHGNGQTDPVIFTAQTHPSQQRLGTLTNNAIYQNTETSPVFYNPYPEMLYNFPISSNFLNNRYFDFTLIMHFMPGDFINLTTDQQYFDLFHISFIVYDLDEEELLLTSTQDVDFKKFGETLPRKI
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