NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1002227

Scaffold Ga0208222_1002227


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1002227 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5241
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003663Metagenome / Metatranscriptome474Y
F003690Metagenome / Metatranscriptome473Y
F008132Metagenome / Metatranscriptome338Y
F014129Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0208222_10022271F003663AGGTGGMLSTAIEILEATKNSIFDEDIMGMAGELHTRRNELPDETYAKYLFMYSAALSSKVADLVTKILLTEQEMSDLIATIDEMDNLSETI
Ga0208222_100222714F014129AGGTGGMTTLIREITLSNVSADEANLIVCVFCSDYASEMFCGKCNEYKGLMTLGEWLAYTQESWVM
Ga0208222_100222716F003690AGGAMIPSGFELVISNEYGFELDSFLGAIYLPWHTIIITALALIAYKIYKRKKNK
Ga0208222_100222717F008132GAGGMMTKWDTIQEDVKDAYVYLDEEEAYNEALDTEEDVFGFSKAIELDHLTDEELDNVATMLGIK
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