NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1002946

Scaffold Ga0208222_1002946


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1002946 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4465
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015201Metagenome / Metatranscriptome256Y
F025487Metagenome201Y
F067537Metagenome / Metatranscriptome125N
F087066Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208222_10029461F015201GGAGGMNKALIVYLVDKRKKLARKDIESKHAVTELKKQSAATF
Ga0208222_10029463F087066GGAGMTENQIHFIRGCCTTILMFFAGIGLIAAIFLSPDEPKNNTKFEVIDQYEGCSVIRYTDLTSRWHYFLKCS
Ga0208222_10029465F067537N/AMTTKRQFDYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGATQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE
Ga0208222_10029468F025487GGGGGMTNDSIDLDLVDQTIALIPEQAWTQVRQAIITALVDNMPGFALEKLTGTYDGFDRAEEILYDYYQLPDLKQDLIVDAFKIMGAINCLELLSSLDLTEDELQAMQQQ
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