NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1004262

Scaffold Ga0208222_1004262


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1004262 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3559
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F020342Metagenome / Metatranscriptome224Y
F076006Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208222_10042621F007026N/AMEQTKKYPVIDWTKREYHQLQLVVDALKAICAREDKRHQMDEHLDPHTRDVIDEVIGMLEDEIDYDPTPNESGEPPMTMDEMHTAAWKEHLAMHS
Ga0208222_100426210F076006N/AMYFHLPSNLQQELLAYDPKLKALVKEQEPKKTTKKAKYPLGNI
Ga0208222_10042624F001120N/AMSNKKSHVSFDKTIAGFNVTERGVRSYSKSIKLGPLQVTLNAHESGVRGTISIPGTGLSIPSIKLF
Ga0208222_10042626F020342N/AMSAYVDYLNMFDRINLAACAKRRASANVLDETRFNGEYDTARLWMKYRLIKTTHHSYVED
Ga0208222_10042627F001807GGAGGMTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDLSDYE
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