NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1000372

Scaffold Ga0208465_1000372


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1000372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13154
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (48.84%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004255Metagenome / Metatranscriptome446Y
F010681Metagenome / Metatranscriptome300Y
F022879Metagenome / Metatranscriptome212Y
F034857Metagenome / Metatranscriptome173Y
F047660Metagenome / Metatranscriptome149Y
F085647Metagenome / Metatranscriptome111Y
F097255Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208465_100037213F022879AGGAGMTHHVAHMDKMLFDLKQQYQAQIARLQDKISDQEQEIAKLKTLITLLSIEREYDC
Ga0208465_100037215F097255GAGMIPQRIRQLIMNAEREKIARDFWAEIERLAAEKEVTVDYYLAEFY
Ga0208465_100037228F034857AGGMIKRFIKWFVTPSQKPIVEDVDLYAKIVELENRIANLEEENIETSNCLYELGNSIDAVDVRIDILSVEAFTKNV
Ga0208465_10003723F047660N/AMSYIQIPDFVFDSIINSLERGYEVCDAVDYSSEEIEKSSEYATGYSRATIAGVLEDLKRYKQTVN
Ga0208465_100037230F010681N/AMKLRLTPTQQLWADVFRCAVERSNIYFKDNDLDRHAREHTTVTLALQKGEQFWRELL
Ga0208465_100037238F004255N/AMTDKSKIFYNIWCCAYQRRGLYRGTDREHREHETVRMCLDMKDVKFYQFDTEKPNYLK
Ga0208465_10003724F085647N/AMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG
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