NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1003926

Scaffold Ga0208465_1003926


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1003926 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2499
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F022857Metagenome212Y
F053230Metagenome141Y
F073444Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208465_10039262F053230N/AMFEAILSSVLPIFKDLLWTAAAALLAYALNKIQSQFV
Ga0208465_10039263F001018N/AMTQITRTKLKELNIIQLYEHYGALERSLPLLTPESQELAKAELEACVTLRSEKIDRIYYAMSSHEDAVERIKKEKLLIIKAQKHHESQVESLKGLLNYLKRSLPADANKITGKNYQFTLVKKKDLTVEIKSEVADWTLQEQQDFCIEETITTTKQIVVRSMTGEVLEERTDPSIKTTLLPNLDAIRYAHQTGQALPAGVKVLQEYGIRTKRIYGRASVELEASEYPGELLPED
Ga0208465_10039264F073444AGAAGMSCHQHAVKDFELQIEMNELEMSMLKDGEEVLPYNEPKMDELEQKKLKLLLGKRFHQNATNAYWYYLERSGK
Ga0208465_10039266F022857GAGMEQITVPKLTVTFEVTLDLDYDPFVGRTTTQVAAALEDELNALLYEASPDVTGVSADITSIELND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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