NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000006

Scaffold Ga0210407_10000006


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)341485
Total Scaffold Genes290 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)189 (65.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000279Metagenome / Metatranscriptome1383Y
F001102Metagenome / Metatranscriptome777Y
F001287Metagenome / Metatranscriptome731Y
F002898Metagenome / Metatranscriptome522Y
F028589Metagenome / Metatranscriptome191Y
F067954Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000006142F001102AGGAGMAPGTKKQIDIARLKADLAAASVELLSAHCAADRVRLQYSAQDIVAFGERRALQRAITSAEALHRFFSQIEAQINKEGGTR
Ga0210407_10000006162F002898AGGAGMSDTGEKRSRFRVVLDFLKRLLGKKPAAPEDPYAYVMAPVRRGPKGRSGAAVAEIEDDEYHSFPPRSS
Ga0210407_10000006185F001287GGGGGMNLFYAAIGFAVARWIFKRQAVVDPVTRFRTQGLL
Ga0210407_1000000625F000279GGCGGMTQNNDPGMMEEIVLPEHLLPLESVLGEGVTALDLCTVLATIFSVQSTEVALLRLERGSLRFVFPEYLRTSGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPGANDSREPVAPTPIQKLMSVPIMNRDSAVVGVIQISRKGLDPKLAKDFSREDLHDLELAAGLLATAPALLAN
Ga0210407_10000006268F028589N/AVVAALGFAEETSFRRVHVPNLKGKQIKAVLIFSDRDKAIEVHPAKGAALTIPYGHIDKCDYEFTLGVMGDKSHWLKIEYHDQDAPKEFVLLMDGREYLRILDALKSHTGIEAQVLGNANK
Ga0210407_10000006270F067954N/AMTDKWGRRLFTAGAVWLLLLGLIHSLSLLGKQVPANDTERQLLELMAQYKFNVMGSMRSMGNFLRGFSISFMLAALVMGVLDLALARERAGLLKRVAMINTIWLAAMTAVSLRYFFVVPISFLAIGLLLFALAWLKLPRSVD
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