NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000023

Scaffold Ga0210407_10000023


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000023 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)233602
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)175 (84.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000131Metagenome / Metatranscriptome1986Y
F020310Metagenome / Metatranscriptome224Y
F023471Metagenome / Metatranscriptome210Y
F048446Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000023104F000131GGGGGMKNVSRAICRARLWTILIGCSILATVPPLRAQEISVQEVVTPSTVIVKDGRAVKFAIHGFIEFRSLAEVFPYIETQTQRWHGKISEEERQQLARRLLREGIESRVISMADERPLQALVTHTGEELREAIAKLKESLPPGYAEEFLAVQEKWKRSLNCWSASPVMAGRVLSNWYPIEEGIRLHGAVYDSTEHFWQAAKYHPDTTVGELKELTVLLKGRDWSGWLERLDDDPKIYLPNVYAVEFLRYNLKAERLKMFGEELERHGLKPGDQARLVQQRGESAFRFSAFEEKILWGDLADLLHLVYVFSPADDPIRKILAEHHFDGIYLRERKMGFISEEFRSEMLEIWKVKFLEMPRFREVIAGIPMEIRLEHFLNDGDSPDIPIPVYVGYLNRIGEMARGAKGM
Ga0210407_10000023110F048446AGGAGGMTRTHLRRNAVALASLLILAPFSSAFDSPLSDTAVREAYFLGQRHDDSLPKLLDKYVLYLQPPKTGPYIQSVSLFTPYVLTALNSSQQVSIYSAQQAQLDHLKNPEVVRVTVQIFLTESYAAYSAVATGSDSHSPKGVFVRPSDFWRDFRVRVFQKDQMVIPTAANGEAHYQCNEGGCILSGATLNFEYPAAAFTEASATVQIDPPEGDSVVVDFDLTAFR
Ga0210407_100000235F023471AGGAGGMLRPFTICLLFLTAALPALAEEIVLKDGTKIVGHMTGITTDKIEVETSYGKVQLNRGDILTINFPENSSGKAPDAAAAKQDLPKIDETLTGTQYLNRTGKFSLTLPPEWKIDPDLRHSPGTFAGLSSKDKMRFAMVIQEEYPGSLDSYREVTMLGARRTLSNFEELAHSNVTIDGKAALLVFYRGAVQKSNNLPVEFLSAFIPSGNTYTKVTVWCIEPLFHDMQPAFEKIVTSYRTTGRITAAADTTKP
Ga0210407_1000002398F020310GGAMPSNPKSKSPANDLAAILPQRLSEALIRERTIPRFVDSYVVEHGRHSLQVHAVLYRDLQNLLQREALLTVTARALEIVTRGMHAEDDRKAKPMARQEAAAFRQKFLAGLTRHHRWNVSDALDFQSDLKMYEDLIARAASSRRPRKPFEAANHPFVDRCAFVLDSSFLERARLAASRTLAGLETLAAQVAAEVLRSRLKGSDL
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