NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000035

Scaffold Ga0210407_10000035


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000035 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)190758
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (71.26%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000883Metagenome / Metatranscriptome849Y
F002831Metagenome / Metatranscriptome527Y
F005654Metagenome / Metatranscriptome394Y
F008565Metagenome / Metatranscriptome331Y
F021815Metagenome / Metatranscriptome217Y
F040257Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000035105F002831GAGVPQPTPEDDRKRRRRAVYASETTGLLVIAVLLLVLTLIRYWRDIHWSLR
Ga0210407_10000035122F000883GGAGMSGQVVLYFEDQADALRFALAAGSVMAGDGAQFTDNLLEETARVTRIRLDAVNAGVAKKAGPVRAA
Ga0210407_10000035149F021815GGAGMKKDQEGQANGEVGVELKYCEHCGSLWVRVRGAGRVYCDRCEPKVADLPAAKAKARRPILPVRPPTAIEDIELEIQIEDDDSMDFEAMGGAA
Ga0210407_10000035153F005654AGGAGMSEETLLGKQRNRAGGEKPAPVQYTARDFQLEVLSRLAEMQSVAESLDESWDVKLEAVKDQRLVKFDSRALVALIAIALSITGYVIQEARNTARQDSEIETTKTRVMHLEQIAATNTEARIRTEVQLVELREGQTEIKALIQAQAVAMKKIPPRQ
Ga0210407_1000003527F040257AGGAGMKRTIVVAVWVITVGLLSVTLPASLMAKQKAAPVDLKGMNRIFLGWVDVSPDDYHHQGYSTREEYLAVINHANTAFQEYCQSKAFSGRTMTAAKSKGDEGTAGNDVYVKFSDVAYDHGYRLHLSVHFIDLKTNAEIGSIPVKTYTAHMCGLEGCLIKELDKVSEELQKEFAAGK
Ga0210407_1000003528F008565AGGAGGLKRLAIITVLLLICVSFPCSLEARHKVPRYLTKESTVDMKNMNRVFLGWVDLEPNAWALYGYSSKTDWTDIISSLNADFSRSLQVTYVPGRTITAAKDAADENAAGNDLYIKFSDVRVDYDNYHLILSIHFIDPKTNTEIAAIPVRPYYGNDWGLKNYLKAALDEVGTKLQVEVTGQLQGKKK
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