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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020579 Open in IMG/M |
| Scaffold ID | Ga0210407_10000104 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 107703 |
| Total Scaffold Genes | 114 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (60.53%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023668 | Metagenome | 209 | Y |
| F034860 | Metagenome | 173 | Y |
| F089175 | Metagenome / Metatranscriptome | 109 | Y |
| F100025 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210407_1000010416 | F100025 | N/A | MTEDSETLAELMLHADQFCSKIEAAMKDVAPNPEQEELRTKLGQCRAQLAHLQNVFDEEKLNIENPAVRADFRHLVMALMWVAFYARTALDFKTYRRLVMIESSFTYLLVSRSCRADSNRIIDGEE |
| Ga0210407_1000010434 | F089175 | N/A | VRIRALQFFFSLAFFFSAARVLLAGLSLGQIYALRFVDVDGNTLLTADGHVTVVVLTAQSNIDQVRAVGDRVPGYCLGNPTYRMITVVNFQKKVAKPTRAILSALMRGRLKAEARRLQTRYNEKNITRDARRDIFAVADFDGAATAQLGARFESAAFCTFVFARNGKLLRQWNGVPRAAELAAVVK |
| Ga0210407_1000010480 | F023668 | GAG | MKPLIIRSTKSIISGLTAVLLIGLGHPSAIAQTDTNGKTDEQLLRKLIREENEGKHVIKTTEDSIYVHGAYRRPMIGRAAQEKEESRSLKDISNVSRKSEVVRLAISQSGDMAEEFGNFTLTFDKPDKTHISFEGSYLRVWRKINGEWLEDAFFARRNEPEEKTKKESGP |
| Ga0210407_1000010487 | F034860 | GAG | MNGLKKLRIPTFVSTEQATEWGSHLNAEQHTVLVKAQRALSYTAAAEPNLQLKVNLATQSKLMREAAGAFALTCWAI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |