NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000233

Scaffold Ga0210407_10000233


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000233 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69675
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (82.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002848Metagenome / Metatranscriptome526Y
F011416Metagenome / Metatranscriptome291Y
F086790Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000023312F086790GGAGGMARKYRVGFKTIIAKLVVTKKHLNKIKRHVIKRDQKEIAAQIQAIDVIISACRTRMSATYTGTGNGD
Ga0210407_1000023342F011416AGGTGGMNFTKNIKWQLVLAALGVSLFMTSAVRAQEIDNVYFETPATSAGSNFNTPSAAAANTAVDTAQVEYAAISQASILPANQQDEASVGNFPRTLGSMIAIGVLLIACGLLWKSASNRRNDTLKTHNMLSMRKNSLPNRKAQALHS
Ga0210407_1000023366F002848GAGGMTKHLWILPFASLAIPVLCAGQTAQPKPVSKKSATSTAKSTNSPAKPADPSAKIAYAELTIGELIAEDANRWSDKMSAHAAVSGFVTQIAKGSDGDTDIRICENPKIEGMDRARCIVAKCISRIPCDVPPVGKPVTVKGITRYDAKVGTHWWEIHPVEEIER
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