NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10002520

Scaffold Ga0210407_10002520


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10002520 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15669
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011773Metagenome / Metatranscriptome287Y
F043498Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000252010F011773AGCAGGMSTSRFFLAGILWMSLLASGALPQATNNQAAAVKQSSIIFVGTVSQVAATSFTGVPKSAQTIVVRVDSVLKKPQAVSLKKGDNVTVEVKDPAAFHEGTQATFYTEGWIFGSGVAVKELGHDTPPSGGTPGAAETGEKTVGQVRSEISDQDLQRLLATCDYVVTGRITDVHQWVIPKSAAPRYRTSEHSANWHEAVLQVQSVLKGPKLKRNKMVVRFPLSRDVAWASAPKFEPGQQGIFILKKDQVSGAPTASSGGYKGDVYTCLKPGDWLPITEEARVRSLLKNR
Ga0210407_1000252015F043498N/AVLSVDNMNTKVSGRESLNGAAEPGRDLLEIDVFDGTKSVRAKNRCNASRLET
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