NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10016383

Scaffold Ga0210407_10016383


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10016383 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5497
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021639Metagenome / Metatranscriptome218Y
F023404Metagenome210N
F047601Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100163836F021639AGGMIKWLAAFFAFGATMCTLTILLLLVPGTALDSLWRFNPEARLAFQSFGMAAILLMFVVGAGCAFAAVGLWRSSVWGIRSAVIILSLNIAGDLFNALVRHDYRALIGLPIGGAMIFYLARYRKADSSFSR
Ga0210407_100163837F023404GGAGGMARGIRKSITIPGLLAPTVKQRCAEFGQTIFTPYAVELVCYDLRSDANHAITLEIARDTQAAQDAVDHELVAHYRPGQPRKGLLVQLVERVGHLQSVAARNRHDLIFAPLSAVAERVTFPFDIWRLADPRWQKLGYASLSAYITALIRYDLLVGGPHASNTADCRSKLQRKLTRKTLADRRKGRRRKILLDHLIEEREGRPVPQEELERVKAKISQALRHISVS
Ga0210407_100163839F047601N/AMTDTQLKKLVNEAVSLHRALTTYSERLKALKADLIREARRHKEDFTITDGGGSRWTACGTDGCIARVNFPAPALLSHIDTEDETFDKIIAIAGESLDELFDSRHYLKPIADFRAEVATALPRRAATQLIELCQVECSPRVSFETAETKTKES
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