NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10023554

Scaffold Ga0210407_10023554


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10023554 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4576
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100235541F000703GGTGGMRVREYRESDLAQLRVIHAAQGFDYALPDLSNPLFVTKQVLTDDPSSPPSEADPKSSRVTEHEPRATIIGAAFLRLTAEAYLLLDPRAGTPRQRWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAAKFGKRLARLGWLRDDTWTPYCKKLGPQ
Ga0210407_100235542F099605AGGAGVPNTTQSASWDFNPSDPVRLAATFSFDTEDTQDAAPVATALAAIQARLASAVVTATQPDGATISIAVTI
Ga0210407_100235546F000624AGGAMLNGSAWLTTLVPVAVQFVVFLRWLHRRMRNEEINRAFVRDIATNHLPHIYNALQKIAAQQGIALDETPLVQFVDLNHRRRRE
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