NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10028236

Scaffold Ga0210407_10028236


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10028236 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4173
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006926Metagenome / Metatranscriptome362Y
F008920Metagenome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100282361F006926N/AGGAAVPPARQVTDIALIAGRWQGQITFARGSYQLFYLTINPDGTVIASWDGVTRYGKVTLEGARTRMAFYIWSGSLDYLEGGGQRVILIKEDFGAWDAIVRPLS
Ga0210407_100282363F008920AGAAGGMTSRGCGRRRGLAAAVIGLWLLAAPAAHGQPATGRLDVAGLRAALVAIGYPPREVRNEAGAEYEIVLRLRTGAAVTTRVTLSKDGSLVWLVAWLRKLPPGRTISGNAVLDMLVENDAIGPAHFSYNESVRWFFLNSPVVNQGLTPDRLRGEIDHVAIIAARTEALWDYERWR
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