NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210407_10319568

Scaffold Ga0210407_10319568


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10319568 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002138Metagenome / Metatranscriptome590Y
F013449Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_103195681F002138GGAGMSLGESLLENFGGDLEYHPRRAALYLGLGVAAACLWIFSSSETKFTATPLVFALGGFTLLLKGVFLLRKSSEGIGLSEQEVSELSKPSNQKSLPSLPYQAAQIVQDFGAGALLLWPLLRYGKGLDESWDNAPTFRVLVTGAFLFGLG
Ga0210407_103195682F013449N/AMNVVSSRVQVGLVAFGYGTVFALAAALLYARHLQALKYPADASGGMWAAGDAFLWIFIICLFMIPTAFLIWAMAKFEAIYAAYSQFLLALSLSAPICLTVFLLADTQAGQSLGSLCLFRLLGSPFIFVGIGISRLVARFDRAKRRASYALLIEGLTMAGAVALLIHAISSNRH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.