NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10699892

Scaffold Ga0210407_10699892


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10699892 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016064Metagenome / Metatranscriptome250Y
F016418Metagenome / Metatranscriptome247Y
F096853Metagenome104Y
F101050Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_106998921F101050N/AGNREKKKPKADKNKAKPAVAVTPFGAASNIGKGVGKHK
Ga0210407_106998922F096853GAGGMFSRGQIFEGVIGGIPRSAKVIAIVDGGRIGWLEFRDTKGPPFELDVTKTSVWKLVQVER
Ga0210407_106998923F016418GAGGMSYRGFDLEQKPLMVGWQITITKDGKFIRNGSVTKSLTSAVDEAEKFVDRILAEGDTAAPGARF
Ga0210407_106998924F016064N/ADHIRETVEYRGYSLQLSHASLQWQVLIGTVLKDRPTLPPERQIVKGGNEEETLKRAKTRIDLLIESPSLH
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