NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000007

Scaffold Ga0210403_10000007


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000007 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)261509
Total Scaffold Genes224 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)179 (79.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F010410Metagenome / Metatranscriptome304Y
F047243Metagenome / Metatranscriptome150Y
F062943Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_10000007168F062943GGAMKRVLSLLLLQFSFFGLAVSAQTVSPIIVECGKKCRGEFSITNNGLTALAVSVEARSFSLDTLGHATNRPPDPGVDLQLEEGSARISPKDTHTFAYQLKCAAPPCSVALLSSMVVGHTTEGILVRVQLAHTIYACEKQKDCRKKVRAAAGVTVD
Ga0210403_10000007172F010410AGGAGMPLSKAKVKAFQGKLCAAFTISLLLIPAAFAGDEDQQTFCKYVTEEAAAQRDLLRTPNAIAGFTQPNTGLPTQLVWGVSGSLSNVRKAGLTMDEARKNCALYSASSSAQRAIQYALPSLEKEALQHRLGLIEKASENLDALLTATKKMLDAQNVTRPMAFALQTTKIKLEADRADTQSKIAAIYAPQVGDTPLKELVAEKQGSEVNERRALDRLARQNNWDVALSVGAHQQINPLVGNQGSYGEVTVSYNLASHAINKHLDQAASAYDEWKKVQEGDVIRNAEVLKQQMVGGISVQDTRLKALQLEQKQIESNLQLLGEADTTAAADFRNQLSTAQLLLEVEIGDASFRLDLLKEFLGKN
Ga0210403_1000000727F000207N/AMKMIIASILTTILIVAMTLGAMFILVQATEYVTSLESPLQRASAMGAELLLGVVLLLGTVWLATHLAVRIFSTTEPPSEGGPVG
Ga0210403_1000000777F047243GAGGMSTLHFRRVDRRRTARISVFADLTVQGFTLTNTRFKIHTRSLSVSGHGGLTVLDAEVAVGQTLLVTNENSGQKAECKIISIRPGGDGKNIVAFEFVSPQAEFWKMHFPASGTKPLRRNLPAAAGA
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