NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000023

Scaffold Ga0210403_10000023


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000023 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)182275
Total Scaffold Genes181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)142 (78.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001398Metagenome / Metatranscriptome705Y
F012993Metagenome / Metatranscriptome275Y
F014647Metagenome / Metatranscriptome261Y
F018720Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_10000023113F018720GGAGMSASSPARIGIVAFLAILTVSAGTMLWLLWRFPLMTAVVTLGVLAVLGVLAKLARSCDVDMKDLDRTEQGV
Ga0210403_10000023123F001398GAGGMAGFEHLVQSYDVGDLLDDIASAEPPAYLRRCFAEGWSSPRLSWPRAQQLAVCAMVFDAIVNDRDYEFFERELIADWRLHYARACMKFKDTAWQALRHVLEHDRPSDAQAAAELETLAERLAGA
Ga0210403_10000023152F014647AGTAGGMPRKPRCNFSGAFQAQTLGEGAWQLSRRAPHEIVVFLRGAEHGAARAFGATPIVDLGIEWHDRSVLLTFMSGERAASVAAASAIVHEPLAHLYEGLPLANIDADARRFWRRVFGLVRIPGGRCMLRILTRWRTR
Ga0210403_10000023168F012993AGGAGMTTSLSTKLAALALALMFNSAIMGGIAYLFNAQLQQPTAVTSLASSAATSANGAA
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Institute for Fundamental Biomedical Research
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