NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000241

Scaffold Ga0210403_10000241


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000241 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60636
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (83.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F059437Metagenome / Metatranscriptome134Y
F065202Metagenome / Metatranscriptome128Y
F082044Metagenome / Metatranscriptome113Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000024148F082044GAGGMSVTLKLVHEEGIRLRQQAAHKIEHKDEKTGAVTQTVDWRFTKRPASDGKIVEECQQDEDPRRVDNNGRKMKLGTYTIHVTSGANNLVVERKGKVAPFNFKNNSIRNQVRVQYQRLVDSGRKTQDKKPVHEWKNDGPPKYIPSNTFDGVFVGDGQRAIIDEMPT
Ga0210403_1000024152F102028N/AMIGENPPGSPKHEWGKWPKIRPETVAPLRDGRPDMYNYQPTRFVSLEEAKARGWKHFWTGAVCVTGHRAARYVANSSICVDCQRVEKGLMPVYGKGVPELEEARRRAYTQKNTAPAGPAQPSTAEKKFLEKYAELKDFVLAAESLGRTESEFLAILSWNTTFREAVNRLEESMGIARTQQVTEDFDWTDDKQRVFLITYANTADMKQALRAVGATNVQFHKELSANSDFQRAFDDAAQVARAVFDHAASASAVKGDARMLGRIAANLFPEKFGENLKMDLNVKQNLTLDQAHAQLSTILSRFNRQGLLAAADTADESVIEAEYQLVESGRDNETDPDPEPASENPGSDPNSDLVSGSD
Ga0210403_1000024153F048424AGGAGMMLTEELEDIGKRVRVLRDRVLVKVLPYVHPTLLTPGVEIHKGVVVGVGYGRRQRRKVAFQQSISDGPPVLGPDGKIMQFAPSKLSGRTLWFEDGAETGQIIPMQVKPGDVVEFSFRNITLVDFDRIGFPGIGDLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGSEDWHRA
Ga0210403_1000024155F059437GGAGVSVIGNRYLQGSPILPYANVKAYPNTDIFMDLQFVDHTNTPVIPTSISIEIDDITNSVVLPNCGPITLNPAGAVGSAGSPFTYPAFAATMYLQVLASAWQMTFPYIGSQLCQVGMQFTAVDSVTGQPFTSTAVVAVIELCALATVSGLAY
Ga0210403_1000024159F065202N/AMRAVAHGFKPTGGGPPVAVAKEFMHADMKKSAHKTREGRADRKRELDKWAHGQRNTYAAPET
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Institute for Fundamental Biomedical Research
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